Jackson – JSON to java tree model

JSON to Java Tree Model Example

Jackson provides a tree node called com.fasterxml.jackson.databind.JsonNode. The ObjectMapper provides a method to convert JSON to Java tree model with the root being a JsonNode. This can be thought of as being similar to DOM nodes in XML DOM trees. The example below demonstrates building a tree from the JSON string

Lets look at another example that shows the use of the path method. The path method is similar to the get() method but if the node does not exist, it does not return null but returns an object of type MissingNode

One thought on “Jackson – JSON to java tree model

  • December 13, 2016 at 6:26 pm
    Permalink

    How can this be implemented to get inside the nested children of arrays? The structure I am working with is very complex. There is an object with msg array which has a children array of objects which has another children array of objects and so on… Eventually when the first array is empty and we step through until the end, I need to go back up to step through the second array. My overall goal is to parse a file I have and make a visualization model like an n-tree map (I cannot do a binary tree because most of the parents have 2+ children up to 18 from what I saw.). How could I approach something like this? I have been trying to parse this nested children array structure for a while now? Is there a option to attach a file to this comment?
    {
    “success”: true,
    “id”: 0,
    “start_row”: 0,
    “num_rows”: 1,
    “total_rows”: 1,
    “msg”: [
    {
    “id”: 4005,
    “atlas_id”: 3999,
    “ontology_id”: 7,
    “acronym”: “Br”,
    “name”: “brain”,
    “color_hex_triplet”: “A0A0A0”,
    “graph_order”: 0,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: null,
    “children”: [
    {
    “id”: 4006,
    “atlas_id”: 4000,
    “ontology_id”: 7,
    “acronym”: “GM”,
    “name”: “gray matter”,
    “color_hex_triplet”: “787878”,
    “graph_order”: 1,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4005,
    “children”: [
    {
    “id”: 4007,
    “atlas_id”: 4001,
    “ontology_id”: 7,
    “acronym”: “Tel”,
    “name”: “telencephalon”,
    “color_hex_triplet”: “D988A3”,
    “graph_order”: 2,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4006,
    “children”: [
    {
    “id”: 4008,
    “atlas_id”: 4002,
    “ontology_id”: 7,
    “acronym”: “Cx”,
    “name”: “cerebral cortex”,
    “color_hex_triplet”: “EDA65F”,
    “graph_order”: 3,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4007,
    “children”: [
    {
    “id”: 4009,
    “atlas_id”: 4003,
    “ontology_id”: 7,
    “acronym”: “FL”,
    “name”: “frontal lobe”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 4,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4008,
    “children”: [
    {
    “id”: 4053,
    “atlas_id”: 4047,
    “ontology_id”: 7,
    “acronym”: “AOrG”,
    “name”: “anterior orbital gyrus”,
    “color_hex_triplet”: “E8BF59”,
    “graph_order”: 5,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4054,
    “atlas_id”: 4048,
    “ontology_id”: 7,
    “acronym”: “AOrG”,
    “name”: “anterior orbital gyrus, left”,
    “color_hex_triplet”: “E8BF59”,
    “graph_order”: 6,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4053,
    “children”: []
    },
    {
    “id”: 4055,
    “atlas_id”: 4049,
    “ontology_id”: 7,
    “acronym”: “AOrG”,
    “name”: “anterior orbital gyrus, right”,
    “color_hex_triplet”: “E8BF59”,
    “graph_order”: 7,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4053,
    “children”: []
    }
    ]
    },
    {
    “id”: 4078,
    “atlas_id”: 4072,
    “ontology_id”: 7,
    “acronym”: “fro”,
    “name”: “frontal operculum”,
    “color_hex_triplet”: “E8C159”,
    “graph_order”: 8,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4079,
    “atlas_id”: 4073,
    “ontology_id”: 7,
    “acronym”: “fro”,
    “name”: “frontal operculum, left”,
    “color_hex_triplet”: “E8C159”,
    “graph_order”: 9,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4078,
    “children”: []
    },
    {
    “id”: 4080,
    “atlas_id”: 4074,
    “ontology_id”: 7,
    “acronym”: “fro”,
    “name”: “frontal operculum, right”,
    “color_hex_triplet”: “E8C159”,
    “graph_order”: 10,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4078,
    “children”: []
    }
    ]
    },
    {
    “id”: 4888,
    “atlas_id”: 4888,
    “ontology_id”: 7,
    “acronym”: “FP”,
    “name”: “frontal pole”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 11,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4889,
    “atlas_id”: 4889,
    “ontology_id”: 7,
    “acronym”: “FP”,
    “name”: “frontal pole, left”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 12,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4888,
    “children”: [
    {
    “id”: 4890,
    “atlas_id”: 4890,
    “ontology_id”: 7,
    “acronym”: “FP-s”,
    “name”: “frontal pole, left, superior aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 13,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4889,
    “children”: []
    },
    {
    “id”: 4891,
    “atlas_id”: 4891,
    “ontology_id”: 7,
    “acronym”: “FPi”,
    “name”: “frontal pole, left, inferior aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 14,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4889,
    “children”: []
    },
    {
    “id”: 4892,
    “atlas_id”: 4892,
    “ontology_id”: 7,
    “acronym”: “FPm”,
    “name”: “frontal pole, left, medial aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 15,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4889,
    “children”: []
    }
    ]
    },
    {
    “id”: 4893,
    “atlas_id”: 4893,
    “ontology_id”: 7,
    “acronym”: “FP”,
    “name”: “frontal pole, right”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 16,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4888,
    “children”: [
    {
    “id”: 4894,
    “atlas_id”: 4894,
    “ontology_id”: 7,
    “acronym”: “FP-s”,
    “name”: “frontal pole, right, superior aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 17,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4893,
    “children”: []
    },
    {
    “id”: 4895,
    “atlas_id”: 4895,
    “ontology_id”: 7,
    “acronym”: “FPi”,
    “name”: “frontal pole, right, inferior aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 18,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4893,
    “children”: []
    },
    {
    “id”: 4896,
    “atlas_id”: 4896,
    “ontology_id”: 7,
    “acronym”: “FPm”,
    “name”: “frontal pole, right, medial aspect”,
    “color_hex_triplet”: “E8C359”,
    “graph_order”: 19,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4893,
    “children”: []
    }
    ]
    }
    ]
    },
    {
    “id”: 4047,
    “atlas_id”: 4041,
    “ontology_id”: 7,
    “acronym”: “GRe”,
    “name”: “gyrus rectus”,
    “color_hex_triplet”: “E8C459”,
    “graph_order”: 20,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4048,
    “atlas_id”: 4042,
    “ontology_id”: 7,
    “acronym”: “GRe”,
    “name”: “gyrus rectus, left”,
    “color_hex_triplet”: “E8C459”,
    “graph_order”: 21,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4047,
    “children”: []
    },
    {
    “id”: 4049,
    “atlas_id”: 4043,
    “ontology_id”: 7,
    “acronym”: “GRe”,
    “name”: “gyrus rectus, right”,
    “color_hex_triplet”: “E8C459”,
    “graph_order”: 22,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4047,
    “children”: []
    }
    ]
    },
    {
    “id”: 4035,
    “atlas_id”: 4029,
    “ontology_id”: 7,
    “acronym”: “IFG”,
    “name”: “inferior frontal gyrus”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 23,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4036,
    “atlas_id”: 4030,
    “ontology_id”: 7,
    “acronym”: “IFG”,
    “name”: “inferior frontal gyrus, left”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 24,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4035,
    “children”: []
    },
    {
    “id”: 4037,
    “atlas_id”: 4031,
    “ontology_id”: 7,
    “acronym”: “IFG”,
    “name”: “inferior frontal gyrus, right”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 25,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4035,
    “children”: []
    },
    {
    “id”: 4041,
    “atlas_id”: 4035,
    “ontology_id”: 7,
    “acronym”: “opIFG”,
    “name”: “inferior frontal gyrus, opercular part”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 26,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4035,
    “children”: [
    {
    “id”: 4042,
    “atlas_id”: 4036,
    “ontology_id”: 7,
    “acronym”: “opIFG”,
    “name”: “inferior frontal gyrus, opercular part, left”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 27,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4041,
    “children”: []
    },
    {
    “id”: 4043,
    “atlas_id”: 4037,
    “ontology_id”: 7,
    “acronym”: “opIFG”,
    “name”: “inferior frontal gyrus, opercular part, right”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 28,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4041,
    “children”: []
    }
    ]
    },
    {
    “id”: 4044,
    “atlas_id”: 4038,
    “ontology_id”: 7,
    “acronym”: “orIFG”,
    “name”: “inferior frontal gyrus, orbital part”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 29,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4035,
    “children”: [
    {
    “id”: 4045,
    “atlas_id”: 4039,
    “ontology_id”: 7,
    “acronym”: “orIFG”,
    “name”: “inferior frontal gyrus, orbital part, left”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 30,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4044,
    “children”: []
    },
    {
    “id”: 4046,
    “atlas_id”: 4040,
    “ontology_id”: 7,
    “acronym”: “orIFG”,
    “name”: “inferior frontal gyrus, orbital part, right”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 31,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4044,
    “children”: []
    }
    ]
    },
    {
    “id”: 4038,
    “atlas_id”: 4032,
    “ontology_id”: 7,
    “acronym”: “trIFG”,
    “name”: “inferior frontal gyrus, triangular part”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 32,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4035,
    “children”: [
    {
    “id”: 4039,
    “atlas_id”: 4033,
    “ontology_id”: 7,
    “acronym”: “trIFG”,
    “name”: “inferior frontal gyrus, triangular part, left”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 33,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4038,
    “children”: []
    },
    {
    “id”: 4040,
    “atlas_id”: 4034,
    “ontology_id”: 7,
    “acronym”: “trIFG”,
    “name”: “inferior frontal gyrus, triangular part, right”,
    “color_hex_triplet”: “E8C659”,
    “graph_order”: 34,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4038,
    “children”: []
    }
    ]
    }
    ]
    },
    {
    “id”: 4900,
    “atlas_id”: 4900,
    “ontology_id”: 7,
    “acronym”: “IRoG”,
    “name”: “inferior rostral gyrus”,
    “color_hex_triplet”: “E8C859”,
    “graph_order”: 35,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4901,
    “atlas_id”: 4901,
    “ontology_id”: 7,
    “acronym”: “IRoG”,
    “name”: “inferior rostral gyrus, left”,
    “color_hex_triplet”: “E8C859”,
    “graph_order”: 36,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4900,
    “children”: []
    },
    {
    “id”: 4902,
    “atlas_id”: 4902,
    “ontology_id”: 7,
    “acronym”: “IRoG”,
    “name”: “inferior rostral gyrus, right”,
    “color_hex_triplet”: “E8C859”,
    “graph_order”: 37,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4900,
    “children”: []
    }
    ]
    },
    {
    “id”: 4059,
    “atlas_id”: 4053,
    “ontology_id”: 7,
    “acronym”: “LOrG”,
    “name”: “lateral orbital gyrus”,
    “color_hex_triplet”: “E8CA59”,
    “graph_order”: 38,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4060,
    “atlas_id”: 4054,
    “ontology_id”: 7,
    “acronym”: “LOrG”,
    “name”: “lateral orbital gyrus, left”,
    “color_hex_triplet”: “E8CA59”,
    “graph_order”: 39,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4059,
    “children”: []
    },
    {
    “id”: 4061,
    “atlas_id”: 4055,
    “ontology_id”: 7,
    “acronym”: “LOrG”,
    “name”: “lateral orbital gyrus, right”,
    “color_hex_triplet”: “E8CA59”,
    “graph_order”: 40,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4059,
    “children”: []
    }
    ]
    },
    {
    “id”: 4050,
    “atlas_id”: 4044,
    “ontology_id”: 7,
    “acronym”: “MOrG”,
    “name”: “medial orbital gyrus”,
    “color_hex_triplet”: “E8CB59”,
    “graph_order”: 41,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4051,
    “atlas_id”: 4045,
    “ontology_id”: 7,
    “acronym”: “MOrG”,
    “name”: “medial orbital gyrus, left”,
    “color_hex_triplet”: “E8CB59”,
    “graph_order”: 42,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4050,
    “children”: []
    },
    {
    “id”: 4052,
    “atlas_id”: 4046,
    “ontology_id”: 7,
    “acronym”: “MOrG”,
    “name”: “medial orbital gyrus, right”,
    “color_hex_triplet”: “E8CB59”,
    “graph_order”: 43,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4050,
    “children”: []
    }
    ]
    },
    {
    “id”: 4028,
    “atlas_id”: 4022,
    “ontology_id”: 7,
    “acronym”: “MFG”,
    “name”: “middle frontal gyrus”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 44,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4029,
    “atlas_id”: 4023,
    “ontology_id”: 7,
    “acronym”: “MFG”,
    “name”: “middle frontal gyrus, left”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 45,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4028,
    “children”: [
    {
    “id”: 4030,
    “atlas_id”: 4024,
    “ontology_id”: 7,
    “acronym”: “MFG-s”,
    “name”: “middle frontal gyrus, left, superior bank of gyrus”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 46,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4029,
    “children”: []
    },
    {
    “id”: 4031,
    “atlas_id”: 4025,
    “ontology_id”: 7,
    “acronym”: “MFG-i”,
    “name”: “middle frontal gyrus, left, inferior bank of gyrus”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 47,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4029,
    “children”: []
    }
    ]
    },
    {
    “id”: 4032,
    “atlas_id”: 4026,
    “ontology_id”: 7,
    “acronym”: “MFG”,
    “name”: “middle frontal gyrus, right”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 48,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4028,
    “children”: [
    {
    “id”: 4033,
    “atlas_id”: 4027,
    “ontology_id”: 7,
    “acronym”: “MFG-s”,
    “name”: “middle frontal gyrus, right, superior bank of gyrus”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 49,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4032,
    “children”: []
    },
    {
    “id”: 4034,
    “atlas_id”: 4028,
    “ontology_id”: 7,
    “acronym”: “MFG-i”,
    “name”: “middle frontal gyrus, right, inferior bank of gyrus”,
    “color_hex_triplet”: “E8CD59”,
    “graph_order”: 50,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 4032,
    “children”: []
    }
    ]
    }
    ]
    },
    {
    “id”: 265504406,
    “atlas_id”: null,
    “ontology_id”: 7,
    “acronym”: “OlfA”,
    “name”: “olfactory area”,
    “color_hex_triplet”: “E8CE59”,
    “graph_order”: 51,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 265504410,
    “atlas_id”: null,
    “ontology_id”: 7,
    “acronym”: “OlfA”,
    “name”: “olfactory area, left”,
    “color_hex_triplet”: “E8CE59”,
    “graph_order”: 52,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 265504406,
    “children”: []
    },
    {
    “id”: 265504414,
    “atlas_id”: null,
    “ontology_id”: 7,
    “acronym”: “OlfA”,
    “name”: “olfactory area, right”,
    “color_hex_triplet”: “E8CE59”,
    “graph_order”: 53,
    “st_level”: null,
    “hemisphere_id”: 2,
    “parent_structure_id”: 265504406,
    “children”: []
    }
    ]
    },
    {
    “id”: 4071,
    “atlas_id”: 4065,
    “ontology_id”: 7,
    “acronym”: “PCLa”,
    “name”: “paracentral lobule, anterior part”,
    “color_hex_triplet”: “E8CF59”,
    “graph_order”: 54,
    “st_level”: null,
    “hemisphere_id”: 3,
    “parent_structure_id”: 4009,
    “children”: [
    {
    “id”: 4072,
    “atlas_id”: 4066,
    “ontology_id”: 7,
    “acronym”: “PCLa”,
    “name”: “paracentral lobule, anterior part, left”,
    “color_hex_triplet”: “E8CF59”,
    “graph_order”: 55,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4071,
    “children”: [
    {
    “id”: 4073,
    “atlas_id”: 4067,
    “ontology_id”: 7,
    “acronym”: “PCLa-s”,
    “name”: “paracentral lobule, anterior part, left, superior bank of gyrus”,
    “color_hex_triplet”: “E8CF59”,
    “graph_order”: 56,
    “st_level”: null,
    “hemisphere_id”: 1,
    “parent_structure_id”: 4072,
    “children”: []
    },
    {
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    “atlas_id”: 4068,
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    “name”: “cingulate gyrus, retrosplenial part, left”,
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    “name”: “cingulate gyrus, retrosplenial part, right”,
    “color_hex_triplet”: “7F6933”,
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    ]
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    },
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    “atlas_id”: 4056,
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    “name”: “subcallosal cingulate gyrus, left”,
    “color_hex_triplet”: “7F5F33”,
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    “children”: []
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    },
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    “acronym”: “HiF”,
    “name”: “hippocampal formation”,
    “color_hex_triplet”: “FFC466”,
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    “children”: [
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    “children”: [
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    “name”: “dentate gyrus, left”,
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    “acronym”: “CA1”,
    “name”: “CA1 field”,
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    },
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    “color_hex_triplet”: “FFBA66”,
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    {
    “id”: 12893,
    “atlas_id”: null,
    “ontology_id”: 7,
    “acronym”: “CA2”,
    “name”: “CA2 field”,

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